Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4965-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:16259415-16261875 (-) // 100.0 //):

Annotation Number : CG4965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-49
Gbrowse :
Probeset : 1622992_at
Accessions : protein= EC:3.1.3.- /// EC:3.1.3.48, nucleotide=
Interpro : 0000087 // M phase of mitotic cell cycle // inferred from electronic annotation /// 0006470 // protein dephosphorylation
FlyMine data for chr2-49.
BioGrid reports that CG4965 interacts with CG3319 CG4760 CG4760 CG4336 CG4336 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 0.20Down
Head9 14 of 4 0.10Down
Eye3 12 of 4 0.03Down
Thoracicoabdominal ganglion22 24 of 4 0.20Down
Salivary gland9 30 of 4 0.08Down
Crop10 14 of 4 0.10Down
Midgut8 04 of 4 0.10Down
Tubule9 02 of 4 0.10Down
Hindgut7 13 of 4 0.10Down
Heart4 11 of 4 0.04Down
Fat body13 34 of 4 0.11Down
Ovary357 104 of 4 3.00Up
Testis38 34 of 4 0.30Down
Male accessory glands6 21 of 4 0.10Down
Virgin spermatheca6 02 of 4 0.06Down
Mated spermatheca6 00 of 4 0.05Down
Adult carcass8 20 of 4 0.10Down
Larval CNS36 54 of 4 0.31Down
Larval Salivary gland18 24 of 4 0.16Down
Larval midgut12 14 of 4 0.11Down
Larval tubule12 03 of 4 0.10Down
Larval hindgut15 14 of 4 0.13Down
Larval fat body35 74 of 4 0.30Down
Larval trachea10 24 of 4 0.09Down
Larval carcass15 33 of 4 0.13Down
S2 cells (growing)20 14 of 4 0.17Down
Whole fly117 74 of 4

Looking for CG4965-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime