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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4972-RA through 18771 annotations produced 1 hits



(CG4972):

Annotation Number : CG4972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032217
Gbrowse : chr2L:10314794-10317575 (+) // 100.0 //
Probeset : 1635278_at
Accessions : protein= NP_609378;, nucleotide= NM_135534;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032217.
BDGP gene expression has embryonic in situ data for CG4972: 13 pix of staining in 17 body parts.
VDRC has 1 RNAi stocks for FBgn0032217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 ± 74 of 4 0.70Down
Head331 ± 184 of 4 1.00None
Eye449 ± 144 of 4 1.34Up
Thoracicoabdominal ganglion253 ± 94 of 4 0.80Down
Salivary gland631 ± 184 of 4 1.87Up
Crop249 ± 34 of 4 0.70Down
Midgut380 ± 144 of 4 1.10Up
Tubule1219 ± 214 of 4 3.60Up
Hindgut255 ± 104 of 4 0.80Down
Heart375 ± 124 of 4 1.12Up
Fat body451 ± 134 of 4 1.34Up
Ovary510 ± 64 of 4 1.50Up
Testis217 ± 104 of 4 0.60Down
Male accessory glands376 ± 94 of 4 1.10Up
Virgin spermatheca344 ± 114 of 4 1.02None
Mated spermatheca374 ± 164 of 4 1.11None
Adult carcass312 ± 104 of 4 0.90None
Larval CNS419 ± 324 of 4 1.24Up
Larval Salivary gland547 ± 154 of 4 1.63Up
Larval midgut239 ± 244 of 4 0.71Down
Larval tubule480 ± 94 of 4 1.40Up
Larval hindgut309 ± 214 of 4 0.92None
Larval fat body264 ± 184 of 4 0.80Down
Larval trachea262 ± 404 of 4 0.78Down
Larval carcass257 ± 294 of 4 0.76None
S2 cells (growing)402 ± 64 of 4 1.20Up
Whole fly336 ± 54 of 4

Looking for CG4972-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime