FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4973-RA through 18771 annotations produced 1 hits

/// GA18564 (CG4973 /// DpseGA18564):

Annotation Number : CG4973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038772
Gbrowse : chr3R:15883471-15885019 (+) // 100.0 //
Probeset : 1640177_at
Accessions : protein= NP_650865;, nucleotide= NM_142608;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0038772.
BDGP gene expression has embryonic in situ data for CG4973: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038772 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	40 ± 1	4 of 4	0.20	Down
Head	42 ± 1	4 of 4	0.20	Down
Eye	35 ± 2	4 of 4	0.17	Down
Thoracicoabdominal ganglion	43 ± 2	4 of 4	0.20	Down
Salivary gland	70 ± 4	4 of 4	0.34	Down
Crop	91 ± 4	4 of 4	0.40	Down
Midgut	61 ± 1	4 of 4	0.30	Down
Tubule	49 ± 2	4 of 4	0.20	Down
Hindgut	47 ± 2	4 of 4	0.20	Down
Heart	41 ± 2	4 of 4	0.20	Down
Fat body	79 ± 5	4 of 4	0.38	Down
Ovary	739 ± 5	4 of 4	3.60	Up
Testis	65 ± 5	4 of 4	0.30	Down
Male accessory glands	85 ± 2	4 of 4	0.40	Down
Virgin spermatheca	100 ± 7	4 of 4	0.48	Down
Mated spermatheca	111 ± 5	4 of 4	0.54	Down
Adult carcass	60 ± 11	4 of 4	0.30	Down
Larval CNS	202 ± 16	4 of 4	0.98	None
Larval Salivary gland	209 ± 7	4 of 4	1.01	None
Larval midgut	63 ± 5	4 of 4	0.31	Down
Larval tubule	75 ± 3	4 of 4	0.40	Down
Larval hindgut	75 ± 4	4 of 4	0.36	Down
Larval fat body	71 ± 5	4 of 4	0.30	Down
Larval trachea	131 ± 16	4 of 4	0.63	Down
Larval carcass	107 ± 4	4 of 4	0.52	Down
S2 cells (growing)	170 ± 0	4 of 4	0.82	Down
Whole fly	207 ± 5	4 of 4

Looking for CG4973-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720