Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4980-RA through 18771 annotations produced 1 hits



(CG4980):

Annotation Number : CG4980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039558
Gbrowse : chr3R:23746994-23748073 (-) // 100.0 //
Probeset : 1626659_at
Accessions : protein= NP_651596;, nucleotide= NM_143339;
Pathway : via spliceosome // inferred by curator"
Interpro : 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0071011 // precatalytic spliceoso
FlyMine data for FBgn0039558.
BDGP gene expression has embryonic in situ data for CG4980: 4 pix of staining in 1 body parts.
BioGrid reports that CG4980 interacts with CG6905 .
VDRC has 1 RNAi stocks for FBgn0039558 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 14 of 4 0.80None
Head21 33 of 4 0.40Down
Eye46 74 of 4 0.93None
Thoracicoabdominal ganglion40 24 of 4 0.80None
Salivary gland34 31 of 4 0.70Down
Crop39 34 of 4 0.80None
Midgut21 41 of 4 0.40Down
Tubule17 11 of 4 0.30Down
Hindgut24 23 of 4 0.50Down
Heart24 14 of 4 0.48Down
Fat body13 50 of 4 0.27Down
Ovary116 34 of 4 2.30Up
Testis22 13 of 4 0.40Down
Male accessory glands33 33 of 4 0.70Down
Virgin spermatheca13 11 of 4 0.26Down
Mated spermatheca20 11 of 4 0.41Down
Adult carcass18 21 of 4 0.40Down
Larval CNS72 134 of 4 1.46Up
Larval Salivary gland58 64 of 4 1.16None
Larval midgut22 14 of 4 0.45Down
Larval tubule34 14 of 4 0.70Down
Larval hindgut23 14 of 4 0.47Down
Larval fat body48 64 of 4 1.00None
Larval trachea69 244 of 4 1.39None
Larval carcass32 24 of 4 0.65Down
S2 cells (growing)64 14 of 4 1.30Up
Whole fly50 44 of 4

Looking for CG4980-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime