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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4989-RA through 18771 annotations produced 1 hits



(CG34195):

Annotation Number : CG4989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085224
Gbrowse : chr2R:13620759-13621993 (+) // 100.0 //
Probeset : 1627688_at
Accessions : protein= NP_001097360;, nucleotide= NM_001103890;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0085224.
VDRC has 2 RNAi stocks for FBgn0085224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 20 of 4 0.40None
Head17 ± 10 of 4 0.40None
Eye34 ± 24 of 4 0.76None
Thoracicoabdominal ganglion25 ± 30 of 4 0.60None
Salivary gland18 ± 20 of 4 0.41None
Crop20 ± 20 of 4 0.40None
Midgut13 ± 20 of 4 0.30None
Tubule14 ± 30 of 4 0.30Down
Hindgut15 ± 10 of 4 0.30None
Heart24 ± 34 of 4 0.53None
Fat body20 ± 70 of 4 0.46None
Ovary107 ± 84 of 4 2.40Up
Testis10 ± 10 of 4 0.20None
Male accessory glands28 ± 40 of 4 0.60None
Virgin spermatheca24 ± 20 of 4 0.53None
Mated spermatheca40 ± 31 of 4 0.89None
Adult carcass11 ± 30 of 4 0.20None
Larval CNS54 ± 63 of 4 1.19None
Larval Salivary gland38 ± 32 of 4 0.85None
Larval midgut13 ± 10 of 4 0.29None
Larval tubule13 ± 00 of 4 0.30None
Larval hindgut24 ± 20 of 4 0.54None
Larval fat body13 ± 30 of 4 0.30None
Larval trachea43 ± 63 of 4 0.96None
Larval carcass21 ± 20 of 4 0.48None
S2 cells (growing)77 ± 24 of 4 1.69None
Whole fly45 ± 122 of 4

Looking for CG4989-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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