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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4993-RB through 18771 annotations produced 1 hits



PRL-1 (PRL-1):

Annotation Number : CG4993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024734
Gbrowse : chr2L:16245825-16257603 (-) // 100.0 //
Probeset : 1631728_s_at
Accessions : protein= NP_609780; /// NP_723956;, nucleotide= NM_135936; /// NM_165150;
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0004727 // prenylated protei
FlyMine data for FBgn0024734.
TRiP has 1 RNAi stocks for FBgn0024734 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain608 354 of 4 1.40Up
Head709 404 of 4 1.70Up
Eye1089 724 of 4 2.58Up
Thoracicoabdominal ganglion457 64 of 4 1.10None
Salivary gland715 174 of 4 1.69Up
Crop858 234 of 4 2.00Up
Midgut751 254 of 4 1.80Up
Tubule755 84 of 4 1.80Up
Hindgut1024 264 of 4 2.40Up
Heart602 514 of 4 1.43Up
Fat body536 664 of 4 1.27Up
Ovary250 54 of 4 0.60Down
Testis126 74 of 4 0.30Down
Male accessory glands901 444 of 4 2.10Up
Virgin spermatheca435 284 of 4 1.03None
Mated spermatheca511 174 of 4 1.21Up
Adult carcass595 184 of 4 1.40Up
Larval CNS976 954 of 4 2.31Up
Larval Salivary gland769 374 of 4 1.82Up
Larval midgut1044 734 of 4 2.47Up
Larval tubule1023 264 of 4 2.40Up
Larval hindgut1302 654 of 4 3.08Up
Larval fat body470 314 of 4 1.10None
Larval trachea556 424 of 4 1.32Up
Larval carcass935 194 of 4 2.21Up
S2 cells (growing)696 284 of 4 1.65Up
Whole fly422 214 of 4

Looking for CG4993-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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