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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5001-RA through 18771 annotations produced 1 hits



(CG5001):

Annotation Number : CG5001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031322
Gbrowse : chr2L:1186255-1196806 (+) // 100.0 //
Probeset : 1623996_at
Accessions : protein= NP_608586;, nucleotide= NM_134742;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0031322.
BioGrid reports that CG5001 interacts with CG8742 CG8374 .
TRiP has 1 RNAi stocks for FBgn0031322 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031322 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 24 of 4 0.80Down
Head243 124 of 4 2.20Up
Eye180 74 of 4 1.67Up
Thoracicoabdominal ganglion71 34 of 4 0.70Down
Salivary gland130 134 of 4 1.20None
Crop508 54 of 4 4.70Up
Midgut127 74 of 4 1.20None
Tubule99 34 of 4 0.90Down
Hindgut304 74 of 4 2.80Up
Heart210 104 of 4 1.95Up
Fat body76 84 of 4 0.71Down
Ovary32 14 of 4 0.30Down
Testis22 24 of 4 0.20Down
Male accessory glands129 24 of 4 1.20Up
Virgin spermatheca98 34 of 4 0.91None
Mated spermatheca121 84 of 4 1.12None
Adult carcass303 124 of 4 2.80Up
Larval CNS44 84 of 4 0.41Down
Larval Salivary gland194 44 of 4 1.79Up
Larval midgut201 104 of 4 1.86Up
Larval tubule197 94 of 4 1.80Up
Larval hindgut373 134 of 4 3.45Up
Larval fat body95 64 of 4 0.90None
Larval trachea749 334 of 4 6.92Up
Larval carcass1070 674 of 4 9.89Up
S2 cells (growing)66 34 of 4 0.61Down
Whole fly108 44 of 4

Looking for CG5001-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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