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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5002-RA through 18771 annotations produced 1 hits



(CG5002):

Annotation Number : CG5002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034275
Gbrowse : chr2R:13637802-13640719 (+) // 100.0 //
Probeset : 1634012_at
Accessions : protein= NP_611262;, nucleotide= NM_137418;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // non-traceable author statement /// 0005215 // transporter activity // inferred from e
FlyMine data for FBgn0034275.
BDGP gene expression has embryonic in situ data for CG5002: 33 pix of staining in 13 body parts.
Homophila reports that CG5002 is a close match (3e-17) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 3 RNAi stocks for FBgn0034275 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head101 ± 74 of 4 0.90None
Eye22 ± 24 of 4 0.20Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.00Down
Salivary gland582 ± 64 of 4 5.30Up
Crop87 ± 34 of 4 0.80None
Midgut280 ± 114 of 4 2.50Up
Tubule2105 ± 2264 of 419.10Up
Hindgut171 ± 224 of 4 1.60None
Heart139 ± 64 of 4 1.26None
Fat body9 ± 30 of 4 0.08Down
Ovary10 ± 02 of 4 0.10Down
Testis70 ± 14 of 4 0.60None
Male accessory glands6 ± 00 of 4 0.10Down
Virgin spermatheca11 ± 12 of 4 0.11Down
Mated spermatheca9 ± 11 of 4 0.09Down
Adult carcass69 ± 24 of 4 0.60None
Larval CNS15 ± 53 of 4 0.14Down
Larval Salivary gland908 ± 874 of 4 8.26Up
Larval midgut188 ± 134 of 4 1.71Up
Larval tubule1862 ± 964 of 416.90Up
Larval hindgut1241 ± 1334 of 411.29Up
Larval fat body32 ± 44 of 4 0.30Down
Larval trachea9 ± 21 of 4 0.09Down
Larval carcass21 ± 10 of 4 0.19Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly110 ± 184 of 4

Looking for CG5002-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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