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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5003-RA through 18771 annotations produced 1 hits



(CG5003):

Annotation Number : CG5003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039554
Gbrowse : chr3R:23739490-23742249 (-) // 100.0 //
Probeset : 1631191_at
Accessions : protein= NP_651593;, nucleotide= NM_143336;
FlyMine data for FBgn0039554.
TRiP has 1 RNAi stocks for FBgn0039554 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 14 of 4 1.20Up
Head47 ± 54 of 4 0.60Down
Eye61 ± 34 of 4 0.81Down
Thoracicoabdominal ganglion74 ± 34 of 4 1.00None
Salivary gland100 ± 54 of 4 1.32Up
Crop67 ± 54 of 4 0.90None
Midgut49 ± 43 of 4 0.60Down
Tubule86 ± 34 of 4 1.10Up
Hindgut71 ± 64 of 4 0.90None
Heart47 ± 34 of 4 0.62Down
Fat body45 ± 44 of 4 0.60Down
Ovary139 ± 14 of 4 1.80Up
Testis36 ± 14 of 4 0.50Down
Male accessory glands80 ± 34 of 4 1.10None
Virgin spermatheca41 ± 34 of 4 0.54Down
Mated spermatheca46 ± 14 of 4 0.60Down
Adult carcass50 ± 04 of 4 0.70Down
Larval CNS149 ± 124 of 4 1.95Up
Larval Salivary gland102 ± 44 of 4 1.33Up
Larval midgut53 ± 34 of 4 0.69Down
Larval tubule66 ± 04 of 4 0.90None
Larval hindgut104 ± 44 of 4 1.37Up
Larval fat body36 ± 24 of 4 0.50Down
Larval trachea97 ± 24 of 4 1.28Up
Larval carcass75 ± 24 of 4 0.99None
S2 cells (growing)171 ± 34 of 4 2.23Up
Whole fly76 ± 44 of 4

Looking for CG5003-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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