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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5008-RA through 18771 annotations produced 1 hits



Gram-negative bacteria binding protein 3 (GNBP3):

Annotation Number : CG5008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040321
Gbrowse : chr3L:8948120-8949598 (+) // 100.0 //
Probeset : 1635470_at
Accessions : protein= NP_523986;, nucleotide= NM_079262;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred f
Interpro : "0004553 // hydrolase activity
FlyMine data for FBgn0040321.
BDGP gene expression has embryonic in situ data for GNBP3: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 22 of 4 0.10Down
Head572 354 of 4 4.50Up
Eye270 494 of 4 2.13None
Thoracicoabdominal ganglion11 22 of 4 0.10Down
Salivary gland8 40 of 4 0.06Down
Crop189 84 of 4 1.50Up
Midgut3 10 of 4 0.00Down
Tubule15 31 of 4 0.10Down
Hindgut173 64 of 4 1.40Up
Heart706 694 of 4 5.56Up
Fat body1086 584 of 4 8.56Up
Ovary2 10 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca791 314 of 4 6.23Up
Mated spermatheca690 394 of 4 5.44Up
Adult carcass687 494 of 4 5.40Up
Larval CNS24 64 of 4 0.19Down
Larval Salivary gland38 32 of 4 0.30Down
Larval midgut4 10 of 4 0.04Down
Larval tubule13 11 of 4 0.10Down
Larval hindgut139 34 of 4 1.09None
Larval fat body2091 2264 of 416.50Up
Larval trachea133 154 of 4 1.05None
Larval carcass330 104 of 4 2.61Up
S2 cells (growing)353 114 of 4 2.78Up
Whole fly127 134 of 4

Looking for CG5008-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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