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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5016-RA through 18771 annotations produced 1 hits



lethal (3) 02640 /// male specific transcript 57D (l(3)02640 /// Mst57Db):

Annotation Number : CG5016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011669
Gbrowse : chr3R:21656443-21656635 (-) // 100.0 //
Probeset : 1628649_at
Accessions : protein= NP_524499; /// NP_612103;, nucleotide= NM_079775; /// NM_138259;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0004418 // hydroxymethylbilane synthase activity // inferred from sequence or structural similarity /// 0004418 // hydro
FlyMine data for FBgn0011669.
VDRC has 1 RNAi stocks for FBgn0011669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye5 20 of 4 0.00Down
Thoracicoabdominal ganglion11 61 of 4 0.00Down
Salivary gland15 30 of 4 0.01Down
Crop5 10 of 4 0.00Down
Midgut7 30 of 4 0.00Down
Tubule6 10 of 4 0.00Down
Hindgut9 40 of 4 0.00Down
Heart11 20 of 4 0.00Down
Fat body11 90 of 4 0.00Down
Ovary32 311 of 4 0.00Down
Testis533 2884 of 4 0.20Down
Male accessory glands9676 3724 of 4 3.40Up
Virgin spermatheca6 20 of 4 0.00Down
Mated spermatheca7 10 of 4 0.00Down
Adult carcass577 2273 of 4 0.20Down
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland5 20 of 4 0.00Down
Larval midgut41 122 of 4 0.01Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut11 50 of 4 0.00Down
Larval fat body4 30 of 4 0.00Down
Larval trachea4 50 of 4 0.00Down
Larval carcass2 10 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly2872 1374 of 4

Looking for CG5016-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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