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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5020-RB through 18771 annotations produced 1 hits



cytoplasmic linker protein 190 (CLIP-190):

Annotation Number : CG5020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020503
Gbrowse : chr2L:17384739-17409699 (+) // 100.0 //
Probeset : 1634712_s_at
Accessions : protein= NP_001036366; /// NP_001036367; /// NP_001137833; /// NP_001137834; /// NP_001162996; /// NP_001162997; /// NP_609835; /// NP_724047; /// NP_724048; /// NP_788072;, nucleotide= NM_001042901; /// NM_001042902; /// NM_001144361; /// NM_001144362; /// NM_001169525; /// NM_001169526; /// NM_135991; /// NM_165213; /// NM_165214; /// NM_176058;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotati
FlyMine data for FBgn0020503.
BDGP gene expression has embryonic in situ data for CLIP-190: 4 pix of staining in 1 body parts.
Homophila reports that CG5020 is a close match (6e-11) to human gene CMD1S;CMH1;MPD1;MYH7;SPMD;SPMM (NP_000248), a gene associated with Cardiomyopathy, dilated, 1S (3);Cardiomyopathy, familial hypertrophic, 1, 192600 (3);Myopathy, Laing distal, 160500 (3);Myopathy, myosin storage, 608358 (3);Scapuloperoneal syndrome, myopathic type, 181430 (3).
BioGrid reports that CG5020 interacts with CG5695 .
TRiP has 1 RNAi stocks for FBgn0020503 available for purchase.
VDRC has 1 RNAi stocks for FBgn0020503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 74 of 4 2.30Up
Head177 44 of 4 1.40Up
Eye159 84 of 4 1.23Up
Thoracicoabdominal ganglion295 104 of 4 2.30Up
Salivary gland227 84 of 4 1.76Up
Crop149 84 of 4 1.20None
Midgut160 34 of 4 1.20Up
Tubule198 74 of 4 1.50Up
Hindgut257 54 of 4 2.00Up
Heart180 44 of 4 1.39Up
Fat body223 224 of 4 1.73Up
Ovary150 24 of 4 1.20None
Testis606 174 of 4 4.70Up
Male accessory glands144 34 of 4 1.10None
Virgin spermatheca137 44 of 4 1.06None
Mated spermatheca156 74 of 4 1.21None
Adult carcass184 94 of 4 1.40Up
Larval CNS154 64 of 4 1.20Up
Larval Salivary gland204 144 of 4 1.58Up
Larval midgut105 24 of 4 0.82None
Larval tubule149 34 of 4 1.20None
Larval hindgut131 24 of 4 1.01None
Larval fat body106 344 of 4 0.80None
Larval trachea93 84 of 4 0.72Down
Larval carcass136 74 of 4 1.06None
S2 cells (growing)128 44 of 4 0.99None
Whole fly129 84 of 4

Looking for CG5020-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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