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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5022-RA through 18771 annotations produced 1 hits



(CG5022):

Annotation Number : CG5022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032225
Gbrowse : chr2L:10344458-10347706 (+) // 100.0 //
Probeset : 1625191_at
Accessions : protein= NP_609384;, nucleotide= NM_135540;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008092 // cytoskeletal protein binding // inferred from e
FlyMine data for FBgn0032225.
Homophila reports that CG5022 is a close match (2e-11) to human gene NF2 (NP_861966), a gene associated with Meningioma, NF2-related, somatic, 607174 (3);Neurofibromatosis, type 2, 101000 (3);Schwannomatosis, 162091 (3).
TRiP has 1 RNAi stocks for FBgn0032225 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032225 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 44 of 414.20Up
Head22 ± 24 of 4 3.40Up
Eye12 ± 04 of 4 1.92Up
Thoracicoabdominal ganglion74 ± 34 of 411.50Up
Salivary gland7 ± 30 of 4 1.20None
Crop1 ± 00 of 4 0.20Down
Midgut1 ± 00 of 4 0.20Down
Tubule6 ± 10 of 4 1.00None
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.11Down
Fat body0 ± 00 of 4 0.13Down
Ovary2 ± 10 of 4 0.40None
Testis6 ± 11 of 4 0.90None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca4 ± 10 of 4 0.74None
Mated spermatheca5 ± 10 of 4 0.89None
Adult carcass1 ± 10 of 4 0.30Down
Larval CNS134 ± 114 of 420.70Up
Larval Salivary gland1 ± 00 of 4 0.18Down
Larval midgut2 ± 10 of 4 0.44None
Larval tubule5 ± 00 of 4 0.90None
Larval hindgut1 ± 00 of 4 0.20Down
Larval fat body4 ± 20 of 4 0.70None
Larval trachea2 ± 30 of 4 0.44None
Larval carcass2 ± 10 of 4 0.41Down
S2 cells (growing)1 ± 00 of 4 0.22Down
Whole fly6 ± 00 of 4

Looking for CG5022-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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