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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5038-RA through 18771 annotations produced 1 hits



(CG5038):

Annotation Number : CG5038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038324
Gbrowse : chr3R:11176947-11179649 (+) // 100.0 //
Probeset : 1638306_at
Accessions : protein= NP_650451;, nucleotide= NM_142194;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0038324.
BDGP gene expression has embryonic in situ data for CG5038: 4 pix of staining in 1 body parts.
Homophila reports that CG5038 is a close match (6e-12) to human gene BBS4 (NP_149017), a gene associated with Bardet-Biedl syndrome 4, 209900 (3).
VDRC has 2 RNAi stocks for FBgn0038324 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 34 of 4 2.00Up
Head26 14 of 4 1.20Up
Eye23 14 of 4 1.03None
Thoracicoabdominal ganglion44 14 of 4 1.90Up
Salivary gland29 14 of 4 1.28Up
Crop30 24 of 4 1.30Up
Midgut12 14 of 4 0.60Down
Tubule18 14 of 4 0.80Down
Hindgut16 14 of 4 0.70Down
Heart26 34 of 4 1.17None
Fat body28 14 of 4 1.23Up
Ovary59 24 of 4 2.60Up
Testis14 14 of 4 0.60Down
Male accessory glands54 34 of 4 2.40Up
Virgin spermatheca16 24 of 4 0.73Down
Mated spermatheca22 24 of 4 0.98None
Adult carcass19 33 of 4 0.80None
Larval CNS75 114 of 4 3.30Up
Larval Salivary gland32 54 of 4 1.44None
Larval midgut14 13 of 4 0.63Down
Larval tubule26 24 of 4 1.20None
Larval hindgut21 14 of 4 0.95None
Larval fat body21 14 of 4 0.90None
Larval trachea31 34 of 4 1.38Up
Larval carcass17 24 of 4 0.76None
S2 cells (growing)59 34 of 4 2.60Up
Whole fly22 04 of 4

Looking for CG5038-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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