FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5041-RA through 18771 annotations produced 1 hits

Tfb4 (Tfb4):

Annotation Number : CG5041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031309
Gbrowse : chr2L:1149444-1150673 (-) // 100.0 //
Probeset : 1628092_at
Accessions : protein= NP_608574;, nucleotide= NM_134730;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
Interpro : 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005675 // holo TFIIH complex // inferred from
FlyMine data for FBgn0031309.
BDGP gene expression has embryonic in situ data for Tfb4: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031309 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 3	4 of 4	0.40	Down
Head	26 ± 1	4 of 4	0.30	Down
Eye	31 ± 1	4 of 4	0.34	Down
Thoracicoabdominal ganglion	33 ± 1	4 of 4	0.40	Down
Salivary gland	44 ± 6	4 of 4	0.47	Down
Crop	52 ± 4	4 of 4	0.60	Down
Midgut	36 ± 4	3 of 4	0.40	Down
Tubule	35 ± 1	4 of 4	0.40	Down
Hindgut	29 ± 1	4 of 4	0.30	Down
Heart	29 ± 1	4 of 4	0.31	Down
Fat body	25 ± 4	2 of 4	0.27	Down
Ovary	238 ± 10	4 of 4	2.50	Up
Testis	111 ± 4	4 of 4	1.20	None
Male accessory glands	55 ± 9	4 of 4	0.60	Down
Virgin spermatheca	18 ± 3	2 of 4	0.20	Down
Mated spermatheca	27 ± 1	4 of 4	0.29	Down
Adult carcass	29 ± 0	2 of 4	0.30	Down
Larval CNS	129 ± 14	4 of 4	1.37	Up
Larval Salivary gland	51 ± 2	4 of 4	0.55	Down
Larval midgut	29 ± 1	3 of 4	0.31	Down
Larval tubule	36 ± 1	4 of 4	0.40	Down
Larval hindgut	30 ± 1	4 of 4	0.33	Down
Larval fat body	48 ± 9	4 of 4	0.50	Down
Larval trachea	68 ± 1	4 of 4	0.72	Down
Larval carcass	41 ± 4	3 of 4	0.44	Down
S2 cells (growing)	228 ± 4	4 of 4	2.43	Up
Whole fly	94 ± 5	4 of 4

Looking for CG5041-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720