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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5041-RA through 18771 annotations produced 1 hits



Tfb4 (Tfb4):

Annotation Number : CG5041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031309
Gbrowse : chr2L:1149444-1150673 (-) // 100.0 //
Probeset : 1628092_at
Accessions : protein= NP_608574;, nucleotide= NM_134730;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
Interpro : 0000439 // core TFIIH complex // inferred from electronic annotation /// 0005675 // holo TFIIH complex // inferred from
FlyMine data for FBgn0031309.
BDGP gene expression has embryonic in situ data for Tfb4: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 34 of 4 0.40Down
Head26 14 of 4 0.30Down
Eye31 14 of 4 0.34Down
Thoracicoabdominal ganglion33 14 of 4 0.40Down
Salivary gland44 64 of 4 0.47Down
Crop52 44 of 4 0.60Down
Midgut36 43 of 4 0.40Down
Tubule35 14 of 4 0.40Down
Hindgut29 14 of 4 0.30Down
Heart29 14 of 4 0.31Down
Fat body25 42 of 4 0.27Down
Ovary238 104 of 4 2.50Up
Testis111 44 of 4 1.20None
Male accessory glands55 94 of 4 0.60Down
Virgin spermatheca18 32 of 4 0.20Down
Mated spermatheca27 14 of 4 0.29Down
Adult carcass29 02 of 4 0.30Down
Larval CNS129 144 of 4 1.37Up
Larval Salivary gland51 24 of 4 0.55Down
Larval midgut29 13 of 4 0.31Down
Larval tubule36 14 of 4 0.40Down
Larval hindgut30 14 of 4 0.33Down
Larval fat body48 94 of 4 0.50Down
Larval trachea68 14 of 4 0.72Down
Larval carcass41 43 of 4 0.44Down
S2 cells (growing)228 44 of 4 2.43Up
Whole fly94 54 of 4

Looking for CG5041-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime