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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5047-RA through 18771 annotations produced 1 hits

CG5047 (mTerf3):

Annotation Number : CG5047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037008
Gbrowse : chr3L:20512688-20513844 (-) // 100.0 //
Probeset : 1623480_at
Accessions : protein= NP_649240;, nucleotide= NM_140983;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037008.
BDGP gene expression has embryonic in situ data for CG5047: 4 pix of staining in 1 body parts.
BioGrid reports that CG5047 interacts with CG9556 .
VDRC has 3 RNAi stocks for FBgn0037008 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 14 of 4 1.70Up
Head60 34 of 4 1.10None
Eye84 54 of 4 1.50Up
Thoracicoabdominal ganglion104 54 of 4 1.80Up
Salivary gland90 34 of 4 1.61Up
Crop63 24 of 4 1.10None
Midgut77 14 of 4 1.40Up
Tubule77 34 of 4 1.40Up
Hindgut99 74 of 4 1.80Up
Heart60 34 of 4 1.07None
Fat body51 124 of 4 0.92None
Ovary76 24 of 4 1.40Up
Testis23 34 of 4 0.40Down
Male accessory glands100 124 of 4 1.80Up
Virgin spermatheca77 44 of 4 1.38Up
Mated spermatheca74 74 of 4 1.33None
Adult carcass67 74 of 4 1.20None
Larval CNS70 124 of 4 1.26None
Larval Salivary gland59 34 of 4 1.05None
Larval midgut62 44 of 4 1.12None
Larval tubule58 24 of 4 1.00None
Larval hindgut64 34 of 4 1.15None
Larval fat body31 34 of 4 0.60Down
Larval trachea85 84 of 4 1.52Up
Larval carcass62 34 of 4 1.11None
S2 cells (growing)92 44 of 4 1.65Up
Whole fly56 24 of 4

Looking for CG5047-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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