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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5048-RA through 18771 annotations produced 1 hits



(CG5048):

Annotation Number : CG5048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036437
Gbrowse : chr3L:14677824-14678942 (+) // 100.0 //
Probeset : 1629835_at
Accessions : protein= NP_648712;, nucleotide= NM_140455;
FlyMine data for FBgn0036437.
BDGP gene expression has embryonic in situ data for CG5048: 14 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0036437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head14 ± 14 of 4 0.10Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion9 ± 21 of 4 0.00Down
Salivary gland28 ± 92 of 4 0.14Down
Crop7 ± 10 of 4 0.00Down
Midgut3 ± 20 of 4 0.00Down
Tubule19 ± 23 of 4 0.10Down
Hindgut17 ± 03 of 4 0.10Down
Heart5 ± 11 of 4 0.03Down
Fat body6 ± 20 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis1890 ± 194 of 4 9.70Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.02Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass15 ± 41 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland33 ± 34 of 4 0.17Down
Larval midgut5 ± 20 of 4 0.03Down
Larval tubule23 ± 14 of 4 0.10Down
Larval hindgut10 ± 10 of 4 0.05Down
Larval fat body274 ± 1434 of 4 1.40None
Larval trachea11 ± 121 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly195 ± 154 of 4

Looking for CG5048-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime