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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5070-RA through 18771 annotations produced 1 hits



(CG5070):

Annotation Number : CG5070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030824
Gbrowse : chrX:17097146-17097857 (+) // 100.0 //
Probeset : 1630727_at
Accessions : protein= NP_573198;, nucleotide= NM_132970;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030824.
BioGrid reports that CG5070 interacts with CG9192 .
VDRC has 3 RNAi stocks for FBgn0030824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.30Down
Head5 ± 00 of 4 0.60None
Eye5 ± 20 of 4 0.54None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40Down
Salivary gland15 ± 50 of 4 1.66None
Crop7 ± 10 of 4 0.80None
Midgut10 ± 23 of 4 1.10None
Tubule9 ± 50 of 4 1.00None
Hindgut143 ± 394 of 415.20Up
Heart2 ± 10 of 4 0.32Down
Fat body8 ± 40 of 4 0.94None
Ovary4 ± 00 of 4 0.50None
Testis4 ± 10 of 4 0.50None
Male accessory glands5 ± 10 of 4 0.50None
Virgin spermatheca6 ± 22 of 4 0.73None
Mated spermatheca9 ± 23 of 4 0.99None
Adult carcass10 ± 10 of 4 1.10None
Larval CNS5 ± 11 of 4 0.58None
Larval Salivary gland14 ± 24 of 4 1.56None
Larval midgut10 ± 11 of 4 1.06None
Larval tubule4 ± 20 of 4 0.50None
Larval hindgut1593 ± 794 of 4169.10Up
Larval fat body7 ± 21 of 4 0.80None
Larval trachea6 ± 20 of 4 0.72None
Larval carcass37 ± 153 of 4 3.98None
S2 cells (growing)5 ± 00 of 4 0.53None
Whole fly9 ± 13 of 4

Looking for CG5070-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime