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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5080-RB through 18771 annotations produced 1 hits


Annotation Number : CG5080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031313
Gbrowse : chr2L:1160289-1163882 (-) // 100.0 //
Probeset : 1624982_s_at
Accessions : protein= NP_608578; /// NP_722684;, nucleotide= NM_134734; /// NM_164406;
FlyMine data for FBgn0031313.
BDGP gene expression has embryonic in situ data for CG5080: 44 pix of staining in 13 body parts.
BioGrid reports that CG5080 interacts with CG8286 CG9951 .
VDRC has 1 RNAi stocks for FBgn0031313 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain335 164 of 4 1.90Up
Head472 274 of 4 2.60Up
Eye119 304 of 4 0.66None
Thoracicoabdominal ganglion367 284 of 4 2.00Up
Salivary gland14 62 of 4 0.08Down
Crop2755 1264 of 415.20Up
Midgut117 84 of 4 0.60Down
Tubule41 43 of 4 0.20Down
Hindgut695 244 of 4 3.80Up
Heart1912 94 of 410.55Up
Fat body1312 1104 of 4 7.24Up
Ovary17 14 of 4 0.10Down
Testis35 14 of 4 0.20Down
Male accessory glands20 24 of 4 0.10Down
Virgin spermatheca750 474 of 4 4.14Up
Mated spermatheca759 294 of 4 4.19Up
Adult carcass869 514 of 4 4.80Up
Larval CNS393 374 of 4 2.17Up
Larval Salivary gland30 73 of 4 0.17Down
Larval midgut40 52 of 4 0.22Down
Larval tubule14 23 of 4 0.10Down
Larval hindgut56 34 of 4 0.31Down
Larval fat body532 454 of 4 2.90Up
Larval trachea14 83 of 4 0.08Down
Larval carcass22 34 of 4 0.12Down
S2 cells (growing)31 34 of 4 0.17Down
Whole fly181 114 of 4

Looking for CG5080-RB. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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