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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5083-RA through 18771 annotations produced 1 hits



Retinoblastoma-family protein 2 (Rbf2):

Annotation Number : CG5083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038390
Gbrowse : chr3R:11791172-11793862 (+) // 100.0 //
Probeset : 1638806_at
Accessions : protein= NP_524372;, nucleotide= NM_079648;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0031523 // Myb complex // inferred from direct
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0010843 // promoter binding // inferred fr
FlyMine data for FBgn0038390.
BDGP gene expression has embryonic in situ data for Rbf2: 12 pix of staining in 15 body parts.
Homophila reports that CG5083 is a close match (5e-18) to human gene RB1 (NP_000312), a gene associated with Bladder cancer, 109800 (3);Osteosarcoma, 259500 (2);Pinealoma with bilateral retinoblastoma (2);Retinoblastoma (3).
TRiP has 1 RNAi stocks for FBgn0038390 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye6 21 of 4 0.07Down
Thoracicoabdominal ganglion5 30 of 4 0.10Down
Salivary gland3 00 of 4 0.03Down
Crop2 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart3 10 of 4 0.04Down
Fat body5 20 of 4 0.06Down
Ovary321 84 of 4 3.20Up
Testis1 00 of 4 0.00Down
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca5 20 of 4 0.06Down
Adult carcass3 10 of 4 0.00Down
Larval CNS70 74 of 4 0.71Down
Larval Salivary gland12 20 of 4 0.13Down
Larval midgut2 00 of 4 0.03Down
Larval tubule4 20 of 4 0.00Down
Larval hindgut7 00 of 4 0.07Down
Larval fat body1 00 of 4 0.00Down
Larval trachea24 24 of 4 0.25Down
Larval carcass11 20 of 4 0.12Down
S2 cells (growing)44 24 of 4 0.44Down
Whole fly100 64 of 4

Looking for CG5083-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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