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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5085-RA through 18771 annotations produced 1 hits

Sirt2 (Sirt2):

Annotation Number : CG5085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038788
Gbrowse : chr3R:16154191-16155753 (+) // 100.0 //
Probeset : 1626458_at
Accessions : protein= NP_650880;, nucleotide= NM_142623;
Interpro : "0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity
FlyMine data for FBgn0038788.
BDGP gene expression has embryonic in situ data for CG5085: 11 pix of staining in 9 body parts.
BioGrid reports that CG5085 interacts with CG9271 CG9046 CG15006 CG17508 CG31204 CG5708 CG11182 CG13510 CG2944 CG14816 CG32139 CG5473 CG31000 CG5650 CG5731 CG15218 CG31679 CG2865 CG12723 CG31811 CG8667 CG9930 CG4184 CG13900 .
TRiP has 3 RNAi stocks for FBgn0038788 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038788 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 34 of 4 1.60Up
Head151 54 of 4 1.20None
Eye330 124 of 4 2.56Up
Thoracicoabdominal ganglion307 94 of 4 2.40Up
Salivary gland144 44 of 4 1.12None
Crop129 44 of 4 1.00None
Midgut112 44 of 4 0.90None
Tubule109 64 of 4 0.80Down
Hindgut108 14 of 4 0.80None
Heart112 44 of 4 0.88None
Fat body105 64 of 4 0.82None
Ovary201 34 of 4 1.60Up
Testis550 134 of 4 4.30Up
Male accessory glands139 94 of 4 1.10None
Virgin spermatheca95 64 of 4 0.74None
Mated spermatheca99 44 of 4 0.77None
Adult carcass125 54 of 4 1.00None
Larval CNS132 54 of 4 1.03None
Larval Salivary gland141 94 of 4 1.10None
Larval midgut102 24 of 4 0.79None
Larval tubule109 14 of 4 0.90None
Larval hindgut102 34 of 4 0.80None
Larval fat body156 424 of 4 1.20None
Larval trachea79 74 of 4 0.62Down
Larval carcass86 34 of 4 0.67Down
S2 cells (growing)160 14 of 4 1.25None
Whole fly128 124 of 4

Looking for CG5085-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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