FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5091-RA through 18771 annotations produced 2 hits

March 2006 (FlyBase/BDGP 5.3) (chr2L:10380117-10382865 (+) // 100.0 //):

Annotation Number : CG5091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1636630_s_at
Accessions : protein= EC:2.4.1.-, nucleotide=
Interpro : 0006487 // protein N-linked glycosylation // inferred from sequence or structural similarity
Homophila reports that CG5091 is a close match (6e-22) to human gene ALG8 (NP_001007028), a gene associated with Congenital disorder of glycosylation, type Ih, 608104 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 0	4 of 4	0.20	Down
Head	9 ± 2	3 of 4	0.10	Down
Eye	16 ± 1	4 of 4	0.26	Down
Thoracicoabdominal ganglion	17 ± 2	4 of 4	0.30	Down
Salivary gland	29 ± 4	3 of 4	0.47	None
Crop	10 ± 0	3 of 4	0.20	Down
Midgut	1128 ± 42	4 of 4	17.70	Up
Tubule	17 ± 1	3 of 4	0.30	Down
Hindgut	234 ± 12	4 of 4	3.70	Up
Heart	13 ± 1	4 of 4	0.21	Down
Fat body	20 ± 3	4 of 4	0.31	Down
Ovary	24 ± 1	4 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	16 ± 2	4 of 4	0.30	Down
Virgin spermatheca	26 ± 4	4 of 4	0.42	None
Mated spermatheca	25 ± 3	4 of 4	0.40	None
Adult carcass	7 ± 4	1 of 4	0.10	Down
Larval CNS	34 ± 3	4 of 4	0.54	None
Larval Salivary gland	18 ± 1	3 of 4	0.29	Down
Larval midgut	573 ± 46	4 of 4	8.98	Up
Larval tubule	242 ± 5	4 of 4	3.80	Up
Larval hindgut	159 ± 8	4 of 4	2.50	Up
Larval fat body	11 ± 2	1 of 4	0.20	Down
Larval trachea	13 ± 2	4 of 4	0.22	Down
Larval carcass	7 ± 2	1 of 4	0.11	Down
S2 cells (growing)	21 ± 1	4 of 4	0.34	Down
Whole fly	63 ± 13	4 of 4

March 2006 (FlyBase/BDGP 5.3) (chr2L:10380117-10382865 (+) // 100.0 //):

Annotation Number : CG5091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623305_at
Accessions : protein= EC:2.4.1.-, nucleotide=
Interpro : 0006487 // protein N-linked glycosylation // inferred from sequence or structural similarity
Homophila reports that CG5091 is a close match (6e-22) to human gene ALG8 (NP_001007028), a gene associated with Congenital disorder of glycosylation, type Ih, 608104 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	3 of 4	1.10	None
Head	6 ± 2	3 of 4	0.80	None
Eye	2 ± 1	1 of 4	0.34	Down
Thoracicoabdominal ganglion	6 ± 0	1 of 4	0.80	None
Salivary gland	12 ± 2	0 of 4	1.49	None
Crop	5 ± 0	2 of 4	0.60	Down
Midgut	20 ± 2	4 of 4	2.50	Up
Tubule	7 ± 0	2 of 4	1.00	None
Hindgut	5 ± 0	2 of 4	0.70	None
Heart	5 ± 0	2 of 4	0.65	None
Fat body	11 ± 1	4 of 4	1.46	Up
Ovary	12 ± 1	4 of 4	1.50	None
Testis	3 ± 0	1 of 4	0.50	Down
Male accessory glands	6 ± 1	2 of 4	0.80	None
Virgin spermatheca	11 ± 1	3 of 4	1.38	None
Mated spermatheca	10 ± 2	2 of 4	1.27	None
Adult carcass	6 ± 2	1 of 4	0.80	None
Larval CNS	17 ± 6	4 of 4	2.17	None
Larval Salivary gland	9 ± 0	3 of 4	1.21	None
Larval midgut	8 ± 1	3 of 4	0.98	None
Larval tubule	6 ± 1	2 of 4	0.70	None
Larval hindgut	6 ± 1	3 of 4	0.73	None
Larval fat body	4 ± 1	0 of 4	0.50	None
Larval trachea	3 ± 0	0 of 4	0.42	Down
Larval carcass	2 ± 0	0 of 4	0.27	Down
S2 cells (growing)	4 ± 0	1 of 4	0.57	Down
Whole fly	8 ± 1	4 of 4

Looking for CG5091-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720