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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5098-RA through 18771 annotations produced 1 hits



(CG5098):

Annotation Number : CG5098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034300
Gbrowse : chr2R:13982522-13988618 (+) // 100.0 //
Probeset : 1637079_at
Accessions : protein= NP_001097363; /// NP_611291;, nucleotide= NM_001103893; /// NM_137447;
FlyMine data for FBgn0034300.
BDGP gene expression has embryonic in situ data for CG5098: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034300 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 104 of 4 3.20Up
Head88 34 of 4 0.80Down
Eye74 84 of 4 0.64Down
Thoracicoabdominal ganglion286 104 of 4 2.50Up
Salivary gland87 64 of 4 0.76Down
Crop52 44 of 4 0.50Down
Midgut43 34 of 4 0.40Down
Tubule35 14 of 4 0.30Down
Hindgut56 24 of 4 0.50Down
Heart36 54 of 4 0.32Down
Fat body41 34 of 4 0.36Down
Ovary347 104 of 4 3.00Up
Testis206 64 of 4 1.80Up
Male accessory glands66 44 of 4 0.60Down
Virgin spermatheca54 44 of 4 0.47Down
Mated spermatheca59 54 of 4 0.52Down
Adult carcass50 24 of 4 0.40Down
Larval CNS266 254 of 4 2.32Up
Larval Salivary gland114 54 of 4 0.99None
Larval midgut43 14 of 4 0.38Down
Larval tubule51 34 of 4 0.40Down
Larval hindgut58 24 of 4 0.51Down
Larval fat body72 94 of 4 0.60Down
Larval trachea93 144 of 4 0.81None
Larval carcass57 14 of 4 0.50Down
S2 cells (growing)114 14 of 4 0.99None
Whole fly114 74 of 4

Looking for CG5098-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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