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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5107-RA through 18771 annotations produced 1 hits


Annotation Number : CG5107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039342
Gbrowse : chr3R:21330934-21331640 (+) // 100.0 //
Probeset : 1634240_at
Accessions : protein= NP_651401;, nucleotide= NM_143144;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039342.
BDGP gene expression has embryonic in situ data for CG5107: 4 pix of staining in 1 body parts.
BioGrid reports that CG5107 interacts with CG9281 .
VDRC has 2 RNAi stocks for FBgn0039342 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 11 of 4 0.00Down
Head18 111 of 4 0.00Down
Eye8 41 of 4 0.01Down
Thoracicoabdominal ganglion28 44 of 4 0.00Down
Salivary gland8 40 of 4 0.01Down
Crop8 20 of 4 0.00Down
Midgut6020 764 of 4 3.80Up
Tubule8 10 of 4 0.00Down
Hindgut12 10 of 4 0.00Down
Heart1 10 of 4 0.00Down
Fat body18 71 of 4 0.01Down
Ovary2 10 of 4 0.00Down
Testis17 131 of 4 0.00Down
Male accessory glands246 74 of 4 0.20Down
Virgin spermatheca34 64 of 4 0.02Down
Mated spermatheca42 153 of 4 0.03Down
Adult carcass8 40 of 4 0.00Down
Larval CNS11 42 of 4 0.01Down
Larval Salivary gland7 20 of 4 0.01Down
Larval midgut9 30 of 4 0.01Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut8 10 of 4 0.01Down
Larval fat body4 10 of 4 0.00Down
Larval trachea5 30 of 4 0.00Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)12 00 of 4 0.01Down
Whole fly1563 1344 of 4

Looking for CG5107-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime