Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5107-RA through 18771 annotations produced 1 hits



(CG5107):

Annotation Number : CG5107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039342
Gbrowse : chr3R:21330934-21331640 (+) // 100.0 //
Probeset : 1634240_at
Accessions : protein= NP_651401;, nucleotide= NM_143144;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039342.
BDGP gene expression has embryonic in situ data for CG5107: 4 pix of staining in 1 body parts.
BioGrid reports that CG5107 interacts with CG9281 .
VDRC has 2 RNAi stocks for FBgn0039342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 11 of 4 0.00Down
Head18 ± 111 of 4 0.00Down
Eye8 ± 41 of 4 0.01Down
Thoracicoabdominal ganglion28 ± 44 of 4 0.00Down
Salivary gland8 ± 40 of 4 0.01Down
Crop8 ± 20 of 4 0.00Down
Midgut6020 ± 764 of 4 3.80Up
Tubule8 ± 10 of 4 0.00Down
Hindgut12 ± 10 of 4 0.00Down
Heart1 ± 10 of 4 0.00Down
Fat body18 ± 71 of 4 0.01Down
Ovary2 ± 10 of 4 0.00Down
Testis17 ± 131 of 4 0.00Down
Male accessory glands246 ± 74 of 4 0.20Down
Virgin spermatheca34 ± 64 of 4 0.02Down
Mated spermatheca42 ± 153 of 4 0.03Down
Adult carcass8 ± 40 of 4 0.00Down
Larval CNS11 ± 42 of 4 0.01Down
Larval Salivary gland7 ± 20 of 4 0.01Down
Larval midgut9 ± 30 of 4 0.01Down
Larval tubule4 ± 00 of 4 0.00Down
Larval hindgut8 ± 10 of 4 0.01Down
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea5 ± 30 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)12 ± 00 of 4 0.01Down
Whole fly1563 ± 1344 of 4

Looking for CG5107-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime