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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5109-RA through 18771 annotations produced 1 hits



Polycomblike (Pcl):

Annotation Number : CG5109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003044
Gbrowse : chr2R:14022933-14026961 (+) // 99.9 //
Probeset : 1623525_at
Accessions : protein= NP_476672;, nucleotide= NM_057324;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0003044.
BDGP gene expression has embryonic in situ data for Pcl: 26 pix of staining in 19 body parts.
BioGrid reports that CG5109 interacts with CG11648 CG11648 CG1028 CG5942 CG7776 CG6502 CG4264 CG18740 CG32443 CG32443 CG32443 CG32443 CG1028 CG1030 CG1030 CG10388 CG12058 CG12058 CG2759 CG2759 CG2759 CG2759 CG3757 CG8013 CG6502 CG7471 CG5109 CG14941 CG6502 CG14941 CG8013 CG7471 CG7471 CG6502 CG6502 CG6502 CG6502 .
TRiP has 3 RNAi stocks for FBgn0003044 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 74 of 4 0.90None
Head39 44 of 4 0.30Down
Eye50 24 of 4 0.40Down
Thoracicoabdominal ganglion117 44 of 4 0.90None
Salivary gland54 44 of 4 0.43Down
Crop57 14 of 4 0.50Down
Midgut41 14 of 4 0.30Down
Tubule44 24 of 4 0.40Down
Hindgut36 24 of 4 0.30Down
Heart31 54 of 4 0.25Down
Fat body60 134 of 4 0.48Down
Ovary354 14 of 4 2.80Up
Testis97 64 of 4 0.80Down
Male accessory glands37 14 of 4 0.30Down
Virgin spermatheca43 24 of 4 0.35Down
Mated spermatheca40 24 of 4 0.32Down
Adult carcass39 24 of 4 0.30Down
Larval CNS280 64 of 4 2.22Up
Larval Salivary gland137 64 of 4 1.09None
Larval midgut53 54 of 4 0.42Down
Larval tubule56 44 of 4 0.40Down
Larval hindgut62 44 of 4 0.50Down
Larval fat body64 34 of 4 0.50Down
Larval trachea89 54 of 4 0.71Down
Larval carcass66 44 of 4 0.53Down
S2 cells (growing)155 24 of 4 1.23Up
Whole fly126 74 of 4

Looking for CG5109-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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