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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5112-RA through 18771 annotations produced 1 hits



(CG5112):

Annotation Number : CG5112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039341
Gbrowse : chr3R:21317211-21318985 (+) // 100.0 //
Probeset : 1625683_at
Accessions : protein= NP_651400;, nucleotide= NM_143143;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : "0016874 // ligase activity // inferred from electronic annotation /// 0016884 // carbon-nitrogen ligase activity
FlyMine data for FBgn0039341.
BDGP gene expression has embryonic in situ data for CG5112: 4 pix of staining in 1 body parts.
Homophila reports that CG5112 is a close match (2e-11) to human gene FAAH (NP_001432), a gene associated with {Drug addiction, susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0039341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 34 of 4 0.30Down
Head121 ± 24 of 4 0.60Down
Eye163 ± 104 of 4 0.76Down
Thoracicoabdominal ganglion86 ± 44 of 4 0.40Down
Salivary gland517 ± 314 of 4 2.40Up
Crop550 ± 84 of 4 2.50Up
Midgut148 ± 74 of 4 0.70Down
Tubule423 ± 64 of 4 2.00Up
Hindgut245 ± 84 of 4 1.10None
Heart770 ± 184 of 4 3.57Up
Fat body677 ± 1294 of 4 3.14Up
Ovary238 ± 124 of 4 1.10None
Testis89 ± 34 of 4 0.40Down
Male accessory glands1103 ± 374 of 4 5.10Up
Virgin spermatheca93 ± 44 of 4 0.43Down
Mated spermatheca118 ± 34 of 4 0.55Down
Adult carcass508 ± 284 of 4 2.40Up
Larval CNS129 ± 74 of 4 0.60Down
Larval Salivary gland651 ± 464 of 4 3.02Up
Larval midgut241 ± 74 of 4 1.12None
Larval tubule422 ± 64 of 4 2.00Up
Larval hindgut211 ± 74 of 4 0.98None
Larval fat body94 ± 114 of 4 0.40Down
Larval trachea261 ± 284 of 4 1.21None
Larval carcass396 ± 274 of 4 1.84Up
S2 cells (growing)343 ± 204 of 4 1.59Up
Whole fly216 ± 114 of 4

Looking for CG5112-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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