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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5114-RA through 18771 annotations produced 1 hits



(CG5114):

Annotation Number : CG5114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036460
Gbrowse : chr3L:14975947-14977592 (+) // 100.0 //
Probeset : 1634942_at
Accessions : protein= NP_648731;, nucleotide= NM_140474;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036460.
BDGP gene expression has embryonic in situ data for CG5114: 20 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0036460 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 34 of 4 0.60Down
Head115 ± 14 of 4 0.60Down
Eye84 ± 84 of 4 0.46Down
Thoracicoabdominal ganglion120 ± 24 of 4 0.70Down
Salivary gland174 ± 154 of 4 0.95None
Crop169 ± 54 of 4 0.90None
Midgut141 ± 64 of 4 0.80Down
Tubule158 ± 234 of 4 0.90None
Hindgut119 ± 34 of 4 0.70Down
Heart153 ± 114 of 4 0.84None
Fat body215 ± 244 of 4 1.17None
Ovary357 ± 44 of 4 2.00Up
Testis180 ± 24 of 4 1.00None
Male accessory glands387 ± 184 of 4 2.10Up
Virgin spermatheca221 ± 144 of 4 1.21None
Mated spermatheca308 ± 114 of 4 1.68Up
Adult carcass151 ± 64 of 4 0.80Down
Larval CNS241 ± 214 of 4 1.32Up
Larval Salivary gland212 ± 134 of 4 1.16None
Larval midgut114 ± 144 of 4 0.63Down
Larval tubule62 ± 44 of 4 0.30Down
Larval hindgut161 ± 214 of 4 0.88None
Larval fat body93 ± 184 of 4 0.50Down
Larval trachea273 ± 484 of 4 1.50Up
Larval carcass255 ± 574 of 4 1.40None
S2 cells (growing)188 ± 14 of 4 1.03None
Whole fly183 ± 94 of 4

Looking for CG5114-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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