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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5123-RA through 18771 annotations produced 1 hits



head involution defect (W):

Annotation Number : CG5123
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003997
Gbrowse : chr3L:18160841-18178737 (-) // 100.0 //
Probeset : 1640235_at
Accessions : protein= NP_524136;, nucleotide= NM_079412;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003997.
BDGP gene expression has embryonic in situ data for W: 67 pix of staining in 33 body parts.
BioGrid reports that CG5123 interacts with CG8414 CG11579 CG2845 CG2845 CG17077 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6829 CG6829 CG6829 CG6829 CG8238 CG18188 CG5370 CG15793 CG15793 CG15793 CG15793 CG6721 CG8293 CG8293 CG8091 CG4531 CG17943 CG7425 CG7672 CG4345 CG15437 CG7892 CG4319 CG4319 CG33193 CG10334 CG1921 CG1921 Dmel CR33559 Dmel CR33010 CG12284 .
VDRC has 2 RNAi stocks for FBgn0003997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 1.00None
Head30 ± 24 of 4 1.30None
Eye46 ± 34 of 4 1.91Up
Thoracicoabdominal ganglion17 ± 14 of 4 0.70None
Salivary gland18 ± 13 of 4 0.78None
Crop98 ± 64 of 4 4.10Up
Midgut34 ± 34 of 4 1.40None
Tubule9 ± 12 of 4 0.40Down
Hindgut39 ± 04 of 4 1.60Up
Heart36 ± 24 of 4 1.53Up
Fat body13 ± 24 of 4 0.55None
Ovary26 ± 04 of 4 1.10None
Testis12 ± 14 of 4 0.50None
Male accessory glands24 ± 34 of 4 1.00None
Virgin spermatheca9 ± 14 of 4 0.40Down
Mated spermatheca11 ± 14 of 4 0.49Down
Adult carcass36 ± 14 of 4 1.50Up
Larval CNS29 ± 24 of 4 1.22None
Larval Salivary gland9 ± 04 of 4 0.40Down
Larval midgut4 ± 00 of 4 0.19Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut56 ± 24 of 4 2.35Up
Larval fat body9 ± 12 of 4 0.40Down
Larval trachea35 ± 104 of 4 1.49None
Larval carcass30 ± 94 of 4 1.26None
S2 cells (growing)3 ± 00 of 4 0.13Down
Whole fly24 ± 44 of 4

Looking for CG5123-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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