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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5130-RA through 18771 annotations produced 1 hits



(CG5130):

Annotation Number : CG5130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037000
Gbrowse : chr3L:20477383-20487884 (-) // 100.0 //
Probeset : 1629778_s_at
Accessions : protein= NP_649233; /// NP_730541;, nucleotide= NM_140976; /// NM_168859;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005385 // zinc ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0008324 //
FlyMine data for FBgn0037000.
BDGP gene expression has embryonic in situ data for CG5130: 20 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0037000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.60Down
Head36 ± 14 of 4 0.90None
Eye44 ± 34 of 4 1.09None
Thoracicoabdominal ganglion36 ± 24 of 4 0.90None
Salivary gland16 ± 20 of 4 0.40Down
Crop13 ± 04 of 4 0.30Down
Midgut55 ± 14 of 4 1.40Up
Tubule316 ± 274 of 4 7.80Up
Hindgut59 ± 34 of 4 1.50Up
Heart17 ± 14 of 4 0.43Down
Fat body31 ± 44 of 4 0.78Down
Ovary53 ± 24 of 4 1.30Up
Testis20 ± 14 of 4 0.50Down
Male accessory glands550 ± 174 of 413.60Up
Virgin spermatheca46 ± 64 of 4 1.14None
Mated spermatheca45 ± 64 of 4 1.13None
Adult carcass45 ± 54 of 4 1.10None
Larval CNS189 ± 164 of 4 4.71Up
Larval Salivary gland18 ± 24 of 4 0.46Down
Larval midgut186 ± 94 of 4 4.61Up
Larval tubule402 ± 244 of 410.00Up
Larval hindgut153 ± 44 of 4 3.80Up
Larval fat body24 ± 44 of 4 0.60Down
Larval trachea198 ± 264 of 4 4.92Up
Larval carcass92 ± 204 of 4 2.30None
S2 cells (growing)60 ± 24 of 4 1.49Up
Whole fly40 ± 24 of 4

Looking for CG5130-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime