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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5137-RA through 18771 annotations produced 1 hits



Cyp312a1 (Cyp312a1):

Annotation Number : CG5137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036778
Gbrowse : chr3L:18123266-18125166 (-) // 100.0 //
Probeset : 1634261_at
Accessions : protein= NP_649030;, nucleotide= NM_140773;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0036778.
Homophila reports that CG5137 is a close match (3e-11) to human gene CYP2R1 (NP_078790), a gene associated with Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3).
VDRC has 3 RNAi stocks for FBgn0036778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 00 of 4 0.00Down
Eye1 10 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 20 of 4 0.02Down
Crop315 244 of 4 1.60Up
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut335 444 of 4 1.70Up
Heart2 10 of 4 0.01Down
Fat body2 10 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis591 264 of 4 3.00Up
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca30 34 of 4 0.15Down
Mated spermatheca41 54 of 4 0.21Down
Adult carcass12 60 of 4 0.10Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 10 of 4 0.01Down
Larval midgut1 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body33 182 of 4 0.20Down
Larval trachea60 214 of 4 0.31Down
Larval carcass71 134 of 4 0.37Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly196 184 of 4

Looking for CG5137-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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