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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5139-RA through 18771 annotations produced 1 hits



(CG5139):

Annotation Number : CG5139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031323
Gbrowse : chr2L:1198598-1199189 (-) // 100.0 //
Probeset : 1626441_at
Accessions : protein= NP_608587;, nucleotide= NM_134743;
FlyMine data for FBgn0031323.
VDRC has 3 RNAi stocks for FBgn0031323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland8 ± 40 of 4 0.08Down
Crop5 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule7 ± 00 of 4 0.10Down
Hindgut7 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.02Down
Fat body5 ± 20 of 4 0.05Down
Ovary4 ± 11 of 4 0.00Down
Testis1147 ± 184 of 411.30Up
Male accessory glands8 ± 00 of 4 0.10Down
Virgin spermatheca6 ± 11 of 4 0.06Down
Mated spermatheca5 ± 10 of 4 0.05Down
Adult carcass10 ± 30 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.04Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.04Down
Larval fat body104 ± 613 of 4 1.00None
Larval trachea10 ± 63 of 4 0.10Down
Larval carcass4 ± 10 of 4 0.04Down
S2 cells (growing)5 ± 10 of 4 0.05Down
Whole fly101 ± 94 of 4

Looking for CG5139-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime