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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5146-RA through 18771 annotations produced 1 hits



lethal (3) persistent salivary gland 2 (l(3)psg2):

Annotation Number : CG5146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035617
Gbrowse : chr3L:5576788-5583468 (+) // 100.0 //
Probeset : 1622931_at
Accessions : protein= NP_647974;, nucleotide= NM_139717;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035617.
BioGrid reports that CG5146 interacts with CG7919 CG9745 .
VDRC has 1 RNAi stocks for FBgn0035617 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 24 of 4 1.80Up
Head29 ± 14 of 4 0.50Down
Eye36 ± 04 of 4 0.67None
Thoracicoabdominal ganglion74 ± 34 of 4 1.40Up
Salivary gland67 ± 34 of 4 1.24None
Crop44 ± 54 of 4 0.80None
Midgut33 ± 24 of 4 0.60Down
Tubule37 ± 14 of 4 0.70Down
Hindgut32 ± 34 of 4 0.60Down
Heart24 ± 24 of 4 0.44Down
Fat body38 ± 74 of 4 0.69None
Ovary204 ± 74 of 4 3.70Up
Testis33 ± 14 of 4 0.60Down
Male accessory glands57 ± 44 of 4 1.10None
Virgin spermatheca52 ± 24 of 4 0.95None
Mated spermatheca52 ± 14 of 4 0.96None
Adult carcass32 ± 24 of 4 0.60Down
Larval CNS175 ± 134 of 4 3.21Up
Larval Salivary gland71 ± 34 of 4 1.30None
Larval midgut42 ± 14 of 4 0.77None
Larval tubule61 ± 54 of 4 1.10None
Larval hindgut55 ± 14 of 4 1.02None
Larval fat body61 ± 34 of 4 1.10None
Larval trachea59 ± 14 of 4 1.08None
Larval carcass44 ± 14 of 4 0.82None
S2 cells (growing)99 ± 04 of 4 1.81Up
Whole fly54 ± 64 of 4

Looking for CG5146-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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