Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5147-RA through 18771 annotations produced 1 hits



(CG5147):

Annotation Number : CG5147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036775
Gbrowse : chr3L:18100945-18102673 (-) // 100.0 //
Probeset : 1625410_at
Accessions : protein= NP_649028;, nucleotide= NM_140771;
Pathway : 0005666 // DNA-directed RNA polymerase III complex // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inf
FlyMine data for FBgn0036775.
BioGrid reports that CG5147 interacts with CG6569 CG8598 .
VDRC has 2 RNAi stocks for FBgn0036775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 14 of 4 0.50Down
Head40 ± 24 of 4 0.30Down
Eye34 ± 14 of 4 0.27Down
Thoracicoabdominal ganglion63 ± 24 of 4 0.50Down
Salivary gland73 ± 104 of 4 0.59Down
Crop61 ± 24 of 4 0.50Down
Midgut55 ± 24 of 4 0.40Down
Tubule66 ± 54 of 4 0.50Down
Hindgut44 ± 24 of 4 0.40Down
Heart53 ± 14 of 4 0.42Down
Fat body50 ± 64 of 4 0.40Down
Ovary316 ± 104 of 4 2.50Up
Testis87 ± 14 of 4 0.70Down
Male accessory glands131 ± 64 of 4 1.00None
Virgin spermatheca41 ± 04 of 4 0.33Down
Mated spermatheca56 ± 24 of 4 0.45Down
Adult carcass41 ± 24 of 4 0.30Down
Larval CNS109 ± 114 of 4 0.87None
Larval Salivary gland74 ± 34 of 4 0.60Down
Larval midgut42 ± 64 of 4 0.34Down
Larval tubule44 ± 44 of 4 0.40Down
Larval hindgut58 ± 44 of 4 0.47Down
Larval fat body60 ± 44 of 4 0.50Down
Larval trachea85 ± 124 of 4 0.68Down
Larval carcass67 ± 104 of 4 0.53Down
S2 cells (growing)80 ± 24 of 4 0.64Down
Whole fly125 ± 24 of 4

Looking for CG5147-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime