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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5150-RA through 18771 annotations produced 1 hits



(CG5150):

Annotation Number : CG5150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035620
Gbrowse : chr3L:5588645-5590452 (+) // 100.0 //
Probeset : 1637660_at
Accessions : protein= NP_647977;, nucleotide= NM_139720;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0035620.
BDGP gene expression has embryonic in situ data for CG5150: 16 pix of staining in 3 body parts.
Homophila reports that CG5150 is a close match (5e-93) to human gene (NP_001623), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0035620 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head5 ± 20 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland15 ± 10 of 4 0.10Down
Crop4 ± 10 of 4 0.00Down
Midgut2268 ± 1604 of 413.80Up
Tubule3 ± 10 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart3 ± 00 of 4 0.02Down
Fat body9 ± 40 of 4 0.06Down
Ovary3 ± 00 of 4 0.00Down
Testis3 ± 21 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.03Down
Mated spermatheca5 ± 11 of 4 0.03Down
Adult carcass8 ± 20 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut498 ± 914 of 4 3.03Up
Larval tubule5 ± 20 of 4 0.00Down
Larval hindgut36 ± 134 of 4 0.22Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)5 ± 10 of 4 0.03Down
Whole fly164 ± 254 of 4

Looking for CG5150-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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