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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5154-RA through 18771 annotations produced 1 hits



Imaginal disc growth factor 5 (Idgf5):

Annotation Number : CG5154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0064237
Gbrowse : chr2R:14281166-14282787 (+) // 100.0 //
Probeset : 1631867_at
Accessions : protein= NP_611321;, nucleotide= NM_137477;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0064237.
Homophila reports that CG5154 is a close match (2e-27) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 2 RNAi stocks for FBgn0064237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 12 of 4 0.20Down
Head239 ± 104 of 4 4.70Up
Eye115 ± 164 of 4 2.29Up
Thoracicoabdominal ganglion11 ± 22 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.10Down
Crop9 ± 11 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule11 ± 12 of 4 0.20Down
Hindgut30 ± 44 of 4 0.60None
Heart311 ± 314 of 4 6.18Up
Fat body709 ± 574 of 414.05Up
Ovary1 ± 00 of 4 0.00Down
Testis11 ± 12 of 4 0.20Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca456 ± 284 of 4 9.04Up
Mated spermatheca318 ± 284 of 4 6.31Up
Adult carcass295 ± 244 of 4 5.80Up
Larval CNS5 ± 10 of 4 0.10Down
Larval Salivary gland20 ± 14 of 4 0.40Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule8 ± 12 of 4 0.20Down
Larval hindgut19 ± 24 of 4 0.38Down
Larval fat body715 ± 1224 of 414.20Up
Larval trachea14 ± 73 of 4 0.29Down
Larval carcass9 ± 12 of 4 0.20Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly50 ± 84 of 4

Looking for CG5154-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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