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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5157-RA through 18771 annotations produced 1 hits



(CG5157):

Annotation Number : CG5157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036575
Gbrowse : chr3L:16129801-16130161 (-) // 100.0 //
Probeset : 1635736_at
Accessions : protein= NP_648843;, nucleotide= NM_140586;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred fr
FlyMine data for FBgn0036575.
Homophila reports that CG5157 is a close match (4e-14) to human gene CYB5A;MCB5 (NP_001905), a gene associated with Methemoglobinemia due to cytochrome b5 deficiency (3).
VDRC has 3 RNAi stocks for FBgn0036575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20None
Head2 ± 00 of 4 0.20Down
Eye3 ± 00 of 4 0.38Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.52None
Crop6 ± 20 of 4 0.60None
Midgut75 ± 34 of 4 7.50Up
Tubule3 ± 00 of 4 0.30Down
Hindgut46 ± 54 of 4 4.60Up
Heart2 ± 10 of 4 0.26Down
Fat body5 ± 20 of 4 0.52Down
Ovary2 ± 10 of 4 0.30Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands10 ± 40 of 4 1.10None
Virgin spermatheca3 ± 10 of 4 0.35Down
Mated spermatheca3 ± 10 of 4 0.33Down
Adult carcass6 ± 30 of 4 0.70None
Larval CNS5 ± 30 of 4 0.55None
Larval Salivary gland3 ± 10 of 4 0.34Down
Larval midgut190 ± 324 of 418.96Up
Larval tubule3 ± 00 of 4 0.30Down
Larval hindgut21 ± 33 of 4 2.13Up
Larval fat body4 ± 20 of 4 0.40None
Larval trachea3 ± 31 of 4 0.35Down
Larval carcass8 ± 10 of 4 0.88None
S2 cells (growing)10 ± 00 of 4 1.00None
Whole fly10 ± 10 of 4

Looking for CG5157-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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