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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5164-RA through 18771 annotations produced 1 hits



glutathione-S-transferase (GstE1):

Annotation Number : CG5164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034335
Gbrowse : chr2R:14285894-14286729 (+) // 100.0 //
Probeset : 1623256_at
Accessions : protein= NP_611323;, nucleotide= NM_137479;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0034335.
BioGrid reports that CG5164 interacts with CG8206 CG8874 .
TRiP has 1 RNAi stocks for FBgn0034335 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034335 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain372 334 of 4 1.70Up
Head393 154 of 4 1.80Up
Eye321 174 of 4 1.46Up
Thoracicoabdominal ganglion395 344 of 4 1.80Up
Salivary gland330 214 of 4 1.50Up
Crop370 114 of 4 1.70Up
Midgut153 34 of 4 0.70None
Tubule579 1094 of 4 2.60Up
Hindgut476 104 of 4 2.20Up
Heart541 914 of 4 2.45Up
Fat body239 524 of 4 1.09None
Ovary326 94 of 4 1.50Up
Testis94 64 of 4 0.40Down
Male accessory glands253 84 of 4 1.10None
Virgin spermatheca366 334 of 4 1.66Up
Mated spermatheca404 264 of 4 1.83Up
Adult carcass207 134 of 4 0.90None
Larval CNS141 164 of 4 0.64None
Larval Salivary gland120 184 of 4 0.54Down
Larval midgut73 94 of 4 0.33Down
Larval tubule124 44 of 4 0.60None
Larval hindgut230 264 of 4 1.04None
Larval fat body318 394 of 4 1.40None
Larval trachea445 894 of 4 2.02Up
Larval carcass104 74 of 4 0.47Down
S2 cells (growing)11 40 of 4 0.05Down
Whole fly220 304 of 4

Looking for CG5164-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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