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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5167-RA through 18771 annotations produced 1 hits



(CG5167):

Annotation Number : CG5167
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038038
Gbrowse : chr3R:8232253-8233824 (+) // 100.0 //
Probeset : 1628547_at
Accessions : protein= NP_650190;, nucleotide= NM_141933;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0038038.
VDRC has 2 RNAi stocks for FBgn0038038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 34 of 4 0.30Down
Head323 214 of 4 1.90Up
Eye186 174 of 4 1.08None
Thoracicoabdominal ganglion64 54 of 4 0.40Down
Salivary gland781 604 of 4 4.51Up
Crop844 284 of 4 4.90Up
Midgut792 424 of 4 4.60Up
Tubule464 234 of 4 2.70Up
Hindgut779 614 of 4 4.50Up
Heart590 244 of 4 3.41Up
Fat body969 1644 of 4 5.59Up
Ovary85 34 of 4 0.50Down
Testis18 14 of 4 0.10Down
Male accessory glands232 64 of 4 1.30Up
Virgin spermatheca635 494 of 4 3.67Up
Mated spermatheca668 604 of 4 3.86Up
Adult carcass646 204 of 4 3.70Up
Larval CNS60 84 of 4 0.35Down
Larval Salivary gland371 624 of 4 2.15Up
Larval midgut703 94 of 4 4.06Up
Larval tubule436 224 of 4 2.50Up
Larval hindgut354 144 of 4 2.05Up
Larval fat body674 874 of 4 3.90Up
Larval trachea204 124 of 4 1.18Up
Larval carcass282 94 of 4 1.63Up
S2 cells (growing)223 84 of 4 1.29Up
Whole fly173 84 of 4

Looking for CG5167-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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