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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5168-RA through 18771 annotations produced 1 hits



(CG5168):

Annotation Number : CG5168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032246
Gbrowse : chr2L:10423314-10425484 (+) // 100.0 //
Probeset : 1624406_at
Accessions : protein= NP_609400;, nucleotide= NM_135556;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0032246.
BDGP gene expression has embryonic in situ data for CG5168: 10 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0032246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain543 ± 204 of 4 0.90None
Head552 ± 94 of 4 0.90None
Eye828 ± 94 of 4 1.42Up
Thoracicoabdominal ganglion517 ± 144 of 4 0.90None
Salivary gland583 ± 124 of 4 1.00None
Crop581 ± 174 of 4 1.00None
Midgut762 ± 174 of 4 1.30Up
Tubule563 ± 194 of 4 1.00None
Hindgut892 ± 174 of 4 1.50Up
Heart1268 ± 524 of 4 2.18Up
Fat body446 ± 294 of 4 0.77Down
Ovary742 ± 134 of 4 1.30Up
Testis410 ± 44 of 4 0.70Down
Male accessory glands1552 ± 344 of 4 2.70Up
Virgin spermatheca915 ± 174 of 4 1.57Up
Mated spermatheca977 ± 174 of 4 1.68Up
Adult carcass459 ± 14 of 4 0.80Down
Larval CNS768 ± 284 of 4 1.32Up
Larval Salivary gland1027 ± 174 of 4 1.77Up
Larval midgut1211 ± 314 of 4 2.08Up
Larval tubule1094 ± 374 of 4 1.90Up
Larval hindgut1062 ± 514 of 4 1.83Up
Larval fat body712 ± 564 of 4 1.20None
Larval trachea1042 ± 344 of 4 1.79Up
Larval carcass821 ± 504 of 4 1.41Up
S2 cells (growing)1399 ± 204 of 4 2.40Up
Whole fly581 ± 234 of 4

Looking for CG5168-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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