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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5178-RA through 18771 annotations produced 1 hits



arthrin (Act88F):

Annotation Number : CG5178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000047
Gbrowse : chr3R:11265709-11267895 (+) // 100.0 //
Probeset : 1626700_at
Accessions : protein= NP_524367;, nucleotide= NM_079643;
Pathway : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // inferred from sequence or stru
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
FlyMine data for FBgn0000047.
Homophila reports that CG5178 is a close match (0) to human gene ACTC1;CMD1R;CMH11 (NP_005150), a gene associated with Cardiomyopathy, dilated, 1R (3);Cardiomyopathy, familial hypertrophic, 11, 612098 (3).
BioGrid reports that CG5178 interacts with CG6873 CG17927 CG17927 CG7445 .
VDRC has 1 RNAi stocks for FBgn0000047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.00Down
Head161 94 of 4 0.40Down
Eye44 64 of 4 0.11Down
Thoracicoabdominal ganglion78 64 of 4 0.20Down
Salivary gland31 32 of 4 0.08Down
Crop19 44 of 4 0.00Down
Midgut19 13 of 4 0.00Down
Tubule5 10 of 4 0.00Down
Hindgut11 11 of 4 0.00Down
Heart37 143 of 4 0.10Down
Fat body26 84 of 4 0.07Down
Ovary3 10 of 4 0.00Down
Testis4 00 of 4 0.00Down
Male accessory glands16 43 of 4 0.00Down
Virgin spermatheca12 10 of 4 0.03Down
Mated spermatheca16 34 of 4 0.04Down
Adult carcass1398 3064 of 4 3.60Up
Larval CNS6 03 of 4 0.02Down
Larval Salivary gland9 10 of 4 0.02Down
Larval midgut25 24 of 4 0.06Down
Larval tubule8 10 of 4 0.00Down
Larval hindgut6 11 of 4 0.02Down
Larval fat body7 30 of 4 0.00Down
Larval trachea9 22 of 4 0.02Down
Larval carcass14 12 of 4 0.04Down
S2 cells (growing)8 30 of 4 0.02Down
Whole fly388 624 of 4

Looking for CG5178-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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