Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5179-RA through 18771 annotations produced 1 hits



Cyclin-dependent kinase9 2.7 (Cdk9):

Annotation Number : CG5179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019949
Gbrowse : chr2R:18523567-18525228 (-) // 100.0 //
Probeset : 1629487_at
Accessions : protein= NP_477226;, nucleotide= NM_057878;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005700 // polytene chromosome // inferred from direct assay /// 00
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activi
FlyMine data for FBgn0019949.
BDGP gene expression has embryonic in situ data for Cdk9: 4 pix of staining in 1 body parts.
Homophila reports that CG5179 is a close match (9e-11) to human gene SRK;STD;ZAP70 (NP_997402), a gene associated with Selective T-cell defect (3).
BioGrid reports that CG5179 interacts with CG6292 .
TRiP has 3 RNAi stocks for FBgn0019949 available for purchase.
VDRC has 3 RNAi stocks for FBgn0019949 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 24 of 4 1.20None
Head86 54 of 4 0.70Down
Eye147 44 of 4 1.19None
Thoracicoabdominal ganglion163 34 of 4 1.30Up
Salivary gland103 154 of 4 0.83None
Crop98 14 of 4 0.80Down
Midgut83 34 of 4 0.70Down
Tubule129 44 of 4 1.00None
Hindgut94 24 of 4 0.80Down
Heart91 44 of 4 0.73Down
Fat body94 94 of 4 0.76Down
Ovary243 34 of 4 2.00Up
Testis120 74 of 4 1.00None
Male accessory glands130 54 of 4 1.00None
Virgin spermatheca91 64 of 4 0.74Down
Mated spermatheca77 14 of 4 0.62Down
Adult carcass80 24 of 4 0.60Down
Larval CNS228 94 of 4 1.84Up
Larval Salivary gland217 54 of 4 1.75Up
Larval midgut76 44 of 4 0.62Down
Larval tubule211 34 of 4 1.70Up
Larval hindgut124 54 of 4 1.00None
Larval fat body140 44 of 4 1.10None
Larval trachea158 104 of 4 1.27Up
Larval carcass108 104 of 4 0.87None
S2 cells (growing)214 34 of 4 1.72Up
Whole fly124 84 of 4

Looking for CG5179-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime