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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5180-RA through 18771 annotations produced 1 hits



(CG5180):

Annotation Number : CG5180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043457
Gbrowse : chr3R:16383651-16385482 (+) // 100.0 //
Probeset : 1632024_at
Accessions : protein= NP_001138087; /// NP_650892;, nucleotide= NM_001144615; /// NM_142635;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0043457.
BDGP gene expression has embryonic in situ data for BEST:LD05530: 6 pix of staining in 1 body parts.
BioGrid reports that CG5180 interacts with CG3978 .
VDRC has 3 RNAi stocks for FBgn0043457 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 84 of 4 1.10None
Head55 ± 24 of 4 0.50Down
Eye64 ± 34 of 4 0.55Down
Thoracicoabdominal ganglion91 ± 44 of 4 0.80Down
Salivary gland76 ± 54 of 4 0.65Down
Crop72 ± 14 of 4 0.60Down
Midgut27 ± 04 of 4 0.20Down
Tubule24 ± 04 of 4 0.20Down
Hindgut45 ± 24 of 4 0.40Down
Heart47 ± 24 of 4 0.40Down
Fat body38 ± 24 of 4 0.32Down
Ovary401 ± 144 of 4 3.40Up
Testis190 ± 114 of 4 1.60Up
Male accessory glands75 ± 54 of 4 0.60Down
Virgin spermatheca45 ± 24 of 4 0.39Down
Mated spermatheca39 ± 34 of 4 0.34Down
Adult carcass41 ± 34 of 4 0.30Down
Larval CNS192 ± 84 of 4 1.62Up
Larval Salivary gland78 ± 44 of 4 0.66Down
Larval midgut25 ± 14 of 4 0.22Down
Larval tubule39 ± 04 of 4 0.30Down
Larval hindgut59 ± 24 of 4 0.50Down
Larval fat body58 ± 84 of 4 0.50Down
Larval trachea88 ± 84 of 4 0.75Down
Larval carcass56 ± 34 of 4 0.48Down
S2 cells (growing)27 ± 24 of 4 0.23Down
Whole fly118 ± 74 of 4

Looking for CG5180-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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