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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5193-RA through 18771 annotations produced 1 hits



Transcription factor IIB (TfIIB):

Annotation Number : CG5193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004915
Gbrowse : chr2L:10431343-10432999 (+) // 100.0 //
Probeset : 1634172_at
Accessions : protein= NP_476888;, nucleotide= NM_057540;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0004915.
BDGP gene expression has embryonic in situ data for TfIIB: 16 pix of staining in 8 body parts.
BioGrid reports that CG5193 interacts with CG8204 .
VDRC has 1 RNAi stocks for FBgn0004915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain383 ± 104 of 4 0.90None
Head314 ± 124 of 4 0.70Down
Eye245 ± 74 of 4 0.58Down
Thoracicoabdominal ganglion368 ± 134 of 4 0.90None
Salivary gland320 ± 184 of 4 0.76Down
Crop383 ± 34 of 4 0.90None
Midgut263 ± 54 of 4 0.60Down
Tubule494 ± 44 of 4 1.20Up
Hindgut231 ± 54 of 4 0.60Down
Heart291 ± 24 of 4 0.69Down
Fat body301 ± 214 of 4 0.72Down
Ovary674 ± 134 of 4 1.60Up
Testis356 ± 54 of 4 0.80None
Male accessory glands256 ± 64 of 4 0.60Down
Virgin spermatheca355 ± 84 of 4 0.84None
Mated spermatheca428 ± 94 of 4 1.02None
Adult carcass269 ± 94 of 4 0.60Down
Larval CNS706 ± 254 of 4 1.68Up
Larval Salivary gland460 ± 124 of 4 1.09None
Larval midgut239 ± 84 of 4 0.57Down
Larval tubule297 ± 54 of 4 0.70Down
Larval hindgut281 ± 44 of 4 0.67Down
Larval fat body302 ± 264 of 4 0.70Down
Larval trachea407 ± 424 of 4 0.97None
Larval carcass364 ± 44 of 4 0.87None
S2 cells (growing)372 ± 74 of 4 0.88None
Whole fly420 ± 224 of 4

Looking for CG5193-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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