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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5197-RA through 18771 annotations produced 1 hits



(CG34458):

Annotation Number : CG5197
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085487
Gbrowse : chr2R:12558315-12560330 (+) // 100.0 //
Probeset : 1633546_at
Accessions : protein= NP_001097340;, nucleotide= NM_001103870;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085487.
Homophila reports that CG5197 is a close match (1e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 3 RNAi stocks for FBgn0085487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.60None
Head5 ± 10 of 4 0.80None
Eye4 ± 00 of 4 0.72None
Thoracicoabdominal ganglion2 ± 10 of 4 0.40None
Salivary gland19 ± 50 of 4 2.88None
Crop17 ± 40 of 4 2.50None
Midgut12 ± 30 of 4 1.80None
Tubule8 ± 10 of 4 1.20None
Hindgut11 ± 30 of 4 1.60None
Heart5 ± 10 of 4 0.80None
Fat body7 ± 20 of 4 1.01None
Ovary9 ± 10 of 4 1.40None
Testis5 ± 10 of 4 0.80None
Male accessory glands15 ± 22 of 4 2.30Up
Virgin spermatheca6 ± 10 of 4 0.86None
Mated spermatheca6 ± 10 of 4 0.96None
Adult carcass12 ± 50 of 4 1.80None
Larval CNS4 ± 10 of 4 0.66None
Larval Salivary gland16 ± 22 of 4 2.36Up
Larval midgut13 ± 20 of 4 1.98None
Larval tubule8 ± 10 of 4 1.30None
Larval hindgut13 ± 20 of 4 1.89None
Larval fat body13 ± 20 of 4 1.90None
Larval trachea11 ± 31 of 4 1.62None
Larval carcass12 ± 10 of 4 1.78None
S2 cells (growing)16 ± 21 of 4 2.45Up
Whole fly6 ± 20 of 4

Looking for CG5197-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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