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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5201-RA through 18771 annotations produced 1 hits



chr3R:12879728-12896135 (+) // 100.0 // (Daughters against dpp):

Annotation Number : CG5201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633556_s_at
Accessions : protein= , nucleotide= NP_001014629; /// NP_477260; /// NP_732196;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007179 // transforming growth factor beta receptor signaling
FlyMine data for full length.
Homophila reports that CG5201 is a close match (3e-11) to human gene DPC4;JIP;MADH4;SMAD4 (NP_005350), a gene associated with Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050 (3);Pancreatic cancer (3);Polyposis, juvenile intestinal, 174900 (3).
BioGrid reports that CG5201 interacts with CG5460 CG14026 CG12399 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 ± 34 of 4 1.70Up
Head237 ± 244 of 4 1.50Up
Eye422 ± 454 of 4 2.68Up
Thoracicoabdominal ganglion410 ± 194 of 4 2.60Up
Salivary gland386 ± 134 of 4 2.45Up
Crop687 ± 164 of 4 4.30Up
Midgut279 ± 44 of 4 1.80Up
Tubule268 ± 274 of 4 1.70Up
Hindgut329 ± 114 of 4 2.10Up
Heart217 ± 54 of 4 1.38Up
Fat body230 ± 354 of 4 1.46Up
Ovary124 ± 54 of 4 0.80None
Testis33 ± 33 of 4 0.20Down
Male accessory glands100 ± 54 of 4 0.60Down
Virgin spermatheca333 ± 374 of 4 2.11Up
Mated spermatheca371 ± 204 of 4 2.35Up
Adult carcass261 ± 124 of 4 1.70Up
Larval CNS317 ± 364 of 4 2.01Up
Larval Salivary gland27 ± 34 of 4 0.17Down
Larval midgut99 ± 114 of 4 0.63Down
Larval tubule143 ± 94 of 4 0.90None
Larval hindgut219 ± 124 of 4 1.39Up
Larval fat body109 ± 34 of 4 0.70None
Larval trachea561 ± 714 of 4 3.55Up
Larval carcass281 ± 174 of 4 1.78Up
S2 cells (growing)25 ± 14 of 4 0.16Down
Whole fly158 ± 184 of 4

Looking for CG5201-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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