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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5202-RA through 18771 annotations produced 2 hits



/// esc-like (CG31864 /// escl):

Annotation Number : CG5202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032391 /// FBgn0051864
Gbrowse : chr2L:11990926-11992819 (+) // 100.0 //
Probeset : 1627314_s_at
Accessions : protein= NP_609532; /// NP_723702; /// NP_723706;, nucleotide= NM_135688; /// NM_164979; /// NM_164983;
Pathway : 0035098 // ESC/E(Z) complex // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0032391 /// FBgn0051864.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 24 of 4 1.80Up
Head92 14 of 4 0.80Down
Eye103 24 of 4 0.91None
Thoracicoabdominal ganglion225 24 of 4 2.00Up
Salivary gland45 91 of 4 0.40Down
Crop79 14 of 4 0.70Down
Midgut117 34 of 4 1.00None
Tubule98 54 of 4 0.90Down
Hindgut62 24 of 4 0.50Down
Heart70 34 of 4 0.62Down
Fat body39 24 of 4 0.34Down
Ovary290 34 of 4 2.50Up
Testis43 14 of 4 0.40Down
Male accessory glands25 14 of 4 0.20Down
Virgin spermatheca47 34 of 4 0.42Down
Mated spermatheca59 34 of 4 0.52Down
Adult carcass50 23 of 4 0.40Down
Larval CNS195 104 of 4 1.72Up
Larval Salivary gland66 24 of 4 0.59Down
Larval midgut94 54 of 4 0.83Down
Larval tubule125 34 of 4 1.10None
Larval hindgut78 14 of 4 0.69Down
Larval fat body71 24 of 4 0.60Down
Larval trachea120 114 of 4 1.06None
Larval carcass57 14 of 4 0.50Down
S2 cells (growing)235 84 of 4 2.07Up
Whole fly114 34 of 4



esc-like (escl):

Annotation Number : CG5202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032391
Gbrowse : chr2L:11990926-11992819 (+) // 100.0 //
Probeset : 1626638_at
Accessions : protein= NP_609532; /// NP_723702;, nucleotide= NM_135688; /// NM_164979;
Pathway : 0035098 // ESC/E(Z) complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042054 // histone methyltransferase activity // in
FlyMine data for FBgn0032391.
VDRC has 4 RNAi stocks for FBgn0032391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 124 of 4 2.10Up
Head28 34 of 4 0.80None
Eye7 12 of 4 0.20Down
Thoracicoabdominal ganglion52 34 of 4 1.40None
Salivary gland13 33 of 4 0.37None
Crop24 24 of 4 0.70None
Midgut21 34 of 4 0.60None
Tubule24 24 of 4 0.70Down
Hindgut17 14 of 4 0.50None
Heart7 13 of 4 0.20Down
Fat body17 44 of 4 0.50None
Ovary129 74 of 4 3.60Up
Testis12 24 of 4 0.40None
Male accessory glands16 24 of 4 0.50None
Virgin spermatheca21 44 of 4 0.60None
Mated spermatheca17 14 of 4 0.48None
Adult carcass11 22 of 4 0.30Down
Larval CNS103 274 of 4 2.88Up
Larval Salivary gland15 13 of 4 0.44None
Larval midgut39 14 of 4 1.09None
Larval tubule35 44 of 4 1.00None
Larval hindgut34 34 of 4 0.97None
Larval fat body21 24 of 4 0.60None
Larval trachea12 14 of 4 0.34None
Larval carcass23 24 of 4 0.64None
S2 cells (growing)58 64 of 4 1.61None
Whole fly36 74 of 4

Looking for CG5202-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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