FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5207-RA through 18771 annotations produced 1 hits

SCP-containing protein A /// SCP-containing protein B /// SCP-containing protein C (scpr-A /// scpr-B /// scpr-C):

Annotation Number : CG5207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037879 /// FBgn0037888 /// FBgn0037889
Gbrowse : chr3R:7066904-7067845 (+) // 100.0 // /// chr3R:7051314-7052098 (+) // 80.94 // /// chrUextra:9799164-9799831 (-) // 74.54 // /// chr3R:7065860-7066644 (-) // 81.28 //
Probeset : 1632185_s_at
Accessions : protein= NP_650053; /// NP_650061; /// NP_650062;, nucleotide= NM_141796; /// NM_141804; /// NM_141805;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037879 /// FBgn0037888 /// FBgn0037889.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.00	Down
Head	41 ± 3	2 of 4	0.00	Down
Eye	41 ± 9	3 of 4	0.04	Down
Thoracicoabdominal ganglion	7 ± 1	0 of 4	0.00	Down
Salivary gland	1055 ± 110	4 of 4	1.01	None
Crop	15 ± 0	0 of 4	0.00	Down
Midgut	8 ± 1	0 of 4	0.00	Down
Tubule	18 ± 1	0 of 4	0.00	Down
Hindgut	4 ± 1	0 of 4	0.00	Down
Heart	9 ± 0	1 of 4	0.01	Down
Fat body	16 ± 3	0 of 4	0.02	Down
Ovary	47 ± 3	4 of 4	0.00	Down
Testis	3907 ± 240	4 of 4	3.70	Up
Male accessory glands	9 ± 4	0 of 4	0.00	Down
Virgin spermatheca	9 ± 1	0 of 4	0.01	Down
Mated spermatheca	11 ± 2	0 of 4	0.01	Down
Adult carcass	47 ± 3	1 of 4	0.00	Down
Larval CNS	5 ± 2	0 of 4	0.01	Down
Larval Salivary gland	201 ± 5	4 of 4	0.19	Down
Larval midgut	8 ± 2	0 of 4	0.01	Down
Larval tubule	15 ± 2	0 of 4	0.00	Down
Larval hindgut	10 ± 1	0 of 4	0.01	Down
Larval fat body	6 ± 3	0 of 4	0.00	Down
Larval trachea	22 ± 17	3 of 4	0.02	Down
Larval carcass	34 ± 7	3 of 4	0.03	Down
S2 cells (growing)	16 ± 2	0 of 4	0.02	Down
Whole fly	1046 ± 22	4 of 4

Looking for CG5207-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720