Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5210-RA through 18771 annotations produced 1 hits



chitinase-like (CG5210):

Annotation Number : CG5210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013763
Gbrowse : chr2R:12579202-12581260 (+) // 100.0 //
Probeset : 1641259_at
Accessions : protein= NP_477081;, nucleotide= NM_057733;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0013763.
BDGP gene expression has embryonic in situ data for Chit: 45 pix of staining in 14 body parts.
Homophila reports that CG5210 is a close match (3e-29) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 3 RNAi stocks for FBgn0013763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 74 of 4 0.20Down
Head2085 704 of 4 2.60Up
Eye1744 1574 of 4 2.18Up
Thoracicoabdominal ganglion545 154 of 4 0.70Down
Salivary gland70 44 of 4 0.09Down
Crop1969 164 of 4 2.50Up
Midgut37 14 of 4 0.00Down
Tubule84 143 of 4 0.10Down
Hindgut2982 1004 of 4 3.70Up
Heart2932 2234 of 4 3.66Up
Fat body3582 3874 of 4 4.47Up
Ovary440 74 of 4 0.50Down
Testis86 44 of 4 0.10Down
Male accessory glands26 14 of 4 0.00Down
Virgin spermatheca3715 1584 of 4 4.63Up
Mated spermatheca3295 1044 of 4 4.11Up
Adult carcass2444 304 of 4 3.00Up
Larval CNS352 554 of 4 0.44Down
Larval Salivary gland187 54 of 4 0.23Down
Larval midgut47 34 of 4 0.06Down
Larval tubule112 184 of 4 0.10Down
Larval hindgut1791 594 of 4 2.23Up
Larval fat body4036 4754 of 4 5.00Up
Larval trachea2410 2654 of 4 3.01Up
Larval carcass689 194 of 4 0.86Down
S2 cells (growing)3403 944 of 4 4.25Up
Whole fly801 94 of 4

Looking for CG5210-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime