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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5212-RA through 18771 annotations produced 1 hits



pellino (Pli):

Annotation Number : CG5212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025574
Gbrowse : chr3R:19685875-19715797 (-) // 100.0 //
Probeset : 1626980_at
Accessions : protein= NP_001097890; /// NP_001097891; /// NP_524466;, nucleotide= NM_001104420; /// NM_001104421; /// NM_079742;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0019207 // kinase regulator activity // inferred fr
FlyMine data for FBgn0025574.
BioGrid reports that CG5212 interacts with CG6276 CG7481 CG9999 CG6175 CG7658 CG7803 CG7879 CG7939 CG8121 CG8697 CG9354 .
TRiP has 1 RNAi stocks for FBgn0025574 available for purchase.
VDRC has 1 RNAi stocks for FBgn0025574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 134 of 4 2.90Up
Head168 84 of 4 2.10Up
Eye431 574 of 4 5.26Up
Thoracicoabdominal ganglion190 64 of 4 2.30Up
Salivary gland116 94 of 4 1.42Up
Crop77 24 of 4 0.90None
Midgut82 24 of 4 1.00None
Tubule260 534 of 4 3.20Up
Hindgut86 34 of 4 1.10None
Heart99 94 of 4 1.21None
Fat body215 364 of 4 2.63Up
Ovary102 34 of 4 1.20Up
Testis20 24 of 4 0.30Down
Male accessory glands151 74 of 4 1.90Up
Virgin spermatheca104 94 of 4 1.28None
Mated spermatheca177 144 of 4 2.17Up
Adult carcass86 64 of 4 1.10None
Larval CNS211 314 of 4 2.59Up
Larval Salivary gland54 84 of 4 0.67Down
Larval midgut195 494 of 4 2.39None
Larval tubule847 734 of 410.40Up
Larval hindgut178 184 of 4 2.18Up
Larval fat body475 524 of 4 5.80Up
Larval trachea62 84 of 4 0.76None
Larval carcass80 84 of 4 0.98None
S2 cells (growing)107 14 of 4 1.31Up
Whole fly81 64 of 4

Looking for CG5212-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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