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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5213-RA through 18771 annotations produced 1 hits



(CG5213):

Annotation Number : CG5213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038345
Gbrowse : chr3R:11320323-11321348 (+) // 100.0 //
Probeset : 1627725_at
Accessions : protein= NP_650473;, nucleotide= NM_142216;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0038345.
BDGP gene expression has embryonic in situ data for CG5213: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head4 20 of 4 0.20Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 20 of 4 0.19Down
Crop1 00 of 4 0.10Down
Midgut3 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart2 10 of 4 0.10Down
Fat body2 10 of 4 0.09Down
Ovary1 00 of 4 0.10Down
Testis379 174 of 416.60Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.13Down
Mated spermatheca2 10 of 4 0.13Down
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland0 00 of 4 0.03Down
Larval midgut3 00 of 4 0.15Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body52 242 of 4 2.30None
Larval trachea2 10 of 4 0.09Down
Larval carcass3 10 of 4 0.16Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly22 34 of 4

Looking for CG5213-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime